Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015920878.1_cds_XP_016469939.1_62438
CDS Infomation

[gene=LOC107792259] [db_xref=GeneID:107792259] [protein=ribosome biogenesis protein BOP1 homolog isoform X2] [protein_id=XP_016469939.1] [location=join(39802..39809,40472..40541,40738..40911,41608..41762,42141..42258,42362..42463,43169..43325,43462..43570,43660..43762,43871..44021,44112..44244,44325..44428,44510..44580,44684..44744,45158..45385,45468..45552,46340..46518,47181..47266)] [gbkey=CDS]
Sequence

ATGACGAGGTTTTCTCTGATGATTCACCAAGTGAATCTGGATCAGAAGATAGTCATCTAT
CTGGGGAAGAGGTACATGGATGTTTTTGTATCAAGTGATGGTGAAGATTCTTTTGATGCC
AAAAGTGACAATGTCAGTGGTAATGGTGCAAGTGGCAGTGGTATAGATGATGTTGAACAC
GGTAAAGGTGATGATGCTGGAAGCGATGACTCCCGCACAGTAGTTGAAGAAAGTGATTCA
TCCGAAGATGAGGTTGCTCCTCGTAATACAGTTGGAGATGTTCCATTGGAGTGGTACAAA
GATGAGGAACATATTGGATATGACCTTGCAGGGAAGAAGATCAAGAAAAAAGAGAAACAA
GATAAATTGGATTCATTTCTTGCCAGTGTTGATGATTCGAAGAATTGGCGTAGAATTTAT
GATGAATATAACGATGAAGAGGTTGAGCTCACGAAAGATGAAGTTAAGCTGGTCAAAAGA
TTGCTGAAAGGAAAGGCACCTCATGCTGATTTTGACCCACATGCGCCCTATGTTGACTGG
TTTTCCTGGGATGATTCCAAGCATCCTCTTTCTAGTGCACCAGAACCAAAGAGACGTTTT
ATCCCTTCAAAATGGGAGAGTAAAAAGGTTGTCCAGTATGTGCGAGCAATTCGAAAGGGA
CTTATAAAGTTTGACGAGAAGCCAAAGGAAGAGCCAAGCGCCTATCTCTTATGGGGAGAT
GATTCCACTGCAATAGATAGACAGGGGTTGGCATATATTCCTGCTCCAAAACCAAAATTG
CCTGGTCATGATGAGTCTTATAACCCTTCTTTAGAATATATTCCTACACAAGAGGATCTC
AACTCATATCAGCTTATGTTTGAGGAAGACCGACCAAAGTTCATCCCGAAACGGTTCACA
TCGCTGAGAAATGTTCCAGCCTATGAGAAAGCTGTCAAGGAAAATTTTGAACGCTGTATG
GATCTTTATTTATGTGCAAGAGTTCGGAAAAAACGTATTAATATCGATCCCGAGTCTTTA
AAGCCCAAGTTGCCAAGTCGCAAGGATCTCAGACCTTATCCAACGTCGTGTTATCTGGAG
TACAAAGGTCATAAAGGTCCAGTTGTGTCAATTTCTACGGACTCTACTGGGCAGTGGATT
GCTTCTGGTTCAAGCGATGGGACAGTGCGCATTTGGGAGGTTGAAACTGGAAGGTGTATA
AGGATCTGGGAGCTGGGGGAATCCGTCCGGCATGTTTCGTGGAATCCTATGCCTGAACGT
CCTATATTGGCAGTCTGCATGGGAGAAGATGTATATCTTTTGAACAGTGGACTAGGCAAT
GCAGAAGAACAGAATAGTCTTGAAGAGCTTTTGAGTGTTGAAACACCATCAGCGGATGAC
TCTGATCATGATAAAACCAATGTGAATTGGGTTCAAGATGATAAGAATGGAGGAATCAGG
TTGAAGCACTTTAAGACTGTTTCTTCAGTTGAGTGGCATCGGAAGGGCGACTATTTCTCA
ACTCTTATGCCCTCTGGCCAATCAAAAGCAGTTTTGATTCACCTGCTCTCAAAGAAACAG
ACTCAAAGAATACCATTCAAGCTTCATGGACTTCCAGTTTCAACTGCTTTCCATCCTTCT
CGCTCTGCCTTCTTTATTTCAACGAAGAAAAATATTCGTGTTTATGATCTCTTGAATCAA
AAGCTCATTAAGAAGCTAGAGACTGGTGTTCGTGAAGTCTCGTCTATTGCTATTCATCCT
GGTGGTGACAATCTTATTGTAGGGAGTAGAGATGGAAAACTGTGCTGGTTTGACATGGAC
CTTTCATCTCAACCGTACAGAGTTCTCAATTGTCATCCGAAGGACATCAACAAAGTGGCC
TTTCATCGCTCCTATCCTTTGTTTGCTTCGTCTTCTGATGATTGTACTGCATACGTTTTC
CATGGCATGGTTTATTCAGATCTAAACCAGAATCCGTTGATTGTACCTCTGGAGATTCTT
CGTGGTCATGCCAGTGAAAATGGAAGAGGTGTCATGGACTGCAAGTTCCATCCTAGGCAA
CCATGGTTGTTTACTGCAGGTGCTGACTCTGTGATCAAGCTCTACTGCCATTAA

Peptide Sequence

PEP ID

XP_016469939.1
PEP Infomation

PREDICTED: ribosome biogenesis protein BOP1 homolog isoform X2 [Nicotiana tabacum]
Sequence

MTRFSLMIHQVNLDQKIVIYLGKRYMDVFVSSDGEDSFDAKSDNVSGNGASGSGIDDVEH
GKGDDAGSDDSRTVVEESDSSEDEVAPRNTVGDVPLEWYKDEEHIGYDLAGKKIKKKEKQ
DKLDSFLASVDDSKNWRRIYDEYNDEEVELTKDEVKLVKRLLKGKAPHADFDPHAPYVDW
FSWDDSKHPLSSAPEPKRRFIPSKWESKKVVQYVRAIRKGLIKFDEKPKEEPSAYLLWGD
DSTAIDRQGLAYIPAPKPKLPGHDESYNPSLEYIPTQEDLNSYQLMFEEDRPKFIPKRFT
SLRNVPAYEKAVKENFERCMDLYLCARVRKKRINIDPESLKPKLPSRKDLRPYPTSCYLE
YKGHKGPVVSISTDSTGQWIASGSSDGTVRIWEVETGRCIRIWELGESVRHVSWNPMPER
PILAVCMGEDVYLLNSGLGNAEEQNSLEELLSVETPSADDSDHDKTNVNWVQDDKNGGIR
LKHFKTVSSVEWHRKGDYFSTLMPSGQSKAVLIHLLSKKQTQRIPFKLHGLPVSTAFHPS
RSAFFISTKKNIRVYDLLNQKLIKKLETGVREVSSIAIHPGGDNLIVGSRDGKLCWFDMD
LSSQPYRVLNCHPKDINKVAFHRSYPLFASSSDDCTAYVFHGMVYSDLNQNPLIVPLEIL
RGHASENGRGVMDCKFHPRQPWLFTAGADSVIKLYCH

Transcript Sequence

Gene sequence data has not been registered.